HsaALTD1038054-3/3 @ hg38
Alternative 5'ss
Gene
ENSG00000178226 | PRSS36
Description
protease, serine 36 [Source:HGNC Symbol;Acc:HGNC:26906]
Coordinates
chr16:31138925-31140415:-
Coord C1 exon
chr16:31140301-31140415
Coord A exon
chr16:31140294-31140300
Coord C2 exon
chr16:31138925-31139416
Length
7 bp
Sequences
Splice sites
5' ss Seq
GAGGTACAG
5' ss Score
6.62
3' ss Seq
GCCTCGCTCCAACTCTGCAGATG
3' ss Score
8.05
Exon sequences
Seq C1 exon
TCCCTGTGGCTGCTGCTGTCTCCATCTTGACACAACGAATCTGTGACTGCCTCTATCAGGGCATCCTGCCCCCTGGAACCCTCTGTGTCCTGTATGCAGAGGGGCAGGAGAACAG
Seq A exon
GTGTGAG
Seq C2 exon
ATGACCTCAGCACCGCCCCTCCTGTGCCAGATGACGGAAGGGTCCTGGATCCTCGTGGGCATGGCTGTTCAAGGGAGCCGGGAGCTGTTTGCTGCCATTGGTCCTGAAGAGGCCTGGATCTCCCAGACAGTGGGAGAGGCCAACTTCCTGCCCCCCAGTGGCTCCCCACACTGGCCCACTGGAGGCAGCAATCTCTGCCCCCCAGAACTGGCCAAGGCCTCGGGATCCCCGCATGCAGTCTACTTCCTGCTCCTGCTGACTCTCCTGATCCAGAGCTGAGGGGCTAGGGTCCCAGCACCACTTCCCCCTTCTCCACCCTCTACTTCCCGCCCAGTGGGGCTGGAATGTGGCCCAGCCGGCTGGAACCTCAAGGGCCCCACCCACCGAGATTGCAGCGGCTCTGGCTAATTGGGCCTCAGTGCCCGGGCTATTTTGAACCCAGGAATCCTTGGGGGTGGTGGGAGGAGCGGACAATAAAGGTGTAAACACAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000178226-22-22,23-22,24-22-3/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.063
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(20.2=100)
A:
NA
C2:
PF0008921=Trypsin=PD(14.1=30.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCTCTGTGTCCTGTATGCA
R:
CACGAGGATCCAGGACCCTTC
Band lengths:
95-102
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains