HsaALTD1038559-2/2 @ hg38
Alternative 5'ss
Gene
ENSG00000180448 | ARHGAP45
Description
Rho GTPase activating protein 45 [Source:HGNC Symbol;Acc:HGNC:17102]
Coordinates
chr19:1067498-1068744:+
Coord C1 exon
chr19:1067498-1067510
Coord A exon
chr19:1067511-1067674
Coord C2 exon
chr19:1068414-1068744
Length
164 bp
Sequences
Splice sites
5' ss Seq
ACGGTAGGG
5' ss Score
7.68
3' ss Seq
TCCCCTCGGACCTGCCCAAGGAG
3' ss Score
1.41
Exon sequences
Seq C1 exon
GAGTGGAGCCCGG
Seq A exon
GTGAGACCCGGAGCTGACGCCGGGCCGCAGGGGGACAGGGACCCGCCCTGTGCTCGGGGCTCATGCTGGGGCGGCGGCTGGGGGCTCGTGCCAGCTACAGCCCCTACCGGGCGGGACGGCAGGGGCCACAGCAGAGAGGCCGGGACCCCGGCATTCAGCTCACG
Seq C2 exon
GAGCTGCCCAGGAAGGATGGGGCTGACGCGGTGTTCCCCGGACCAAGCCTGGAGCCGCCCGCTGGGTCCTCCGGCGTCAAGGCCACAGGGACCCTCAAGCGGCCCACCAGCCTGAGCCGCCACGCCAGCGCGGCTGGCTTCCCCCTGTCGGGTGCTGCCTCCTGGACACTGGGCCGGAGCCACCGGAGCCCACTGACAGCCGCCAGCCCGGGCGAGCTGCCCACCGAGGGTGCCGGCCCGGACGTCGTCGAGGACATCTCCCATCTGCTGGCGGACGTGGCCCGCTTCGCTGAGGGCCTTGAGAAACTTAAGGAGTGTGTGTTGCGTGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000180448-3-10,4-10-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.824 A=NA C2=0.609
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains