HsaALTD1038657-2/4 @ hg38
Alternative 5'ss
Gene
ENSG00000181026 | AEN
Description
apoptosis enhancing nuclease [Source:HGNC Symbol;Acc:HGNC:25722]
Coordinates
chr15:88621282-88626749:+
Coord C1 exon
chr15:88621282-88621382
Coord A exon
chr15:88621383-88621663
Coord C2 exon
chr15:88626146-88626749
Length
281 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGA
5' ss Score
8.72
3' ss Seq
CCTGTGTGTTCTCTCTTCAGGCT
3' ss Score
12.09
Exon sequences
Seq C1 exon
GCCAATAGGCGGGCAGTCGGAGCCGGGCTTGCCCGGGCATGTGGGAGCTGCCGGCTTTCCGGACGCCACGTGCAGACCGGAAGAGACACGCGGGGCTTCAG
Seq A exon
GTGAGATCCAGGACCCTGCACCGGGGCGGCGGGGTCGGGCGGGCTGAGGCCGCGTGTCCCGGGTCGCAGGTCCCCGCGCGTTGTTTCCGCCCCGGCCTGCGGCGGGGACGCCTGAACTGGGCTGACCCTGCCCTACCGGCCCGCAGAAAAGCAGGCCGGGCGCCGCCTGTCTCCAGCCCTCGCTCTGCTCGGGGGTCCAGGGCCAGAGGGGGCGGCGCTGGTCGTTGGGACTCGGCCCAGCTGCCGCGGCCAGCAAGTGACCAACGCCCGAGTCCTTCCCG
Seq C2 exon
GCTGCTGCCCCATTGGAAGATTACTCCCCAGGCTTCCCTTGCCCCAAGCAGTGAGCTGACTGGAATGGTACCCCGGGAGGCCCCTGAGTCTGCTCAGTGCCTGTGCCCTTCCCTCACCATCCCAAATGCCAAGGATGTGCTTCGGAAGAGGCACAAGAGAAGGAGCCGACAGCACCAGCGGTTCATGGCCCGGAAGGCCTTGCTGCAGGAGCAGGGGCTGCTGAGCATGCCTCCAGAACCAGGGTCCTCCCCACTGCCCACCCCTTTCGGGGCAGCGACAGCAACTGAAGCTGCCAGCAGTGGGAAGCAGTGTCTGAGGGCTGGATCTGGCAGTGCCCCATGCAGCAGAAGGCCTGCTCCCGGGAAAGCCTCAGGGCCCTTGCCCAGCAAGTGTGTGGCTATCGACTGTGAGATGGTGGGCACGGGACCCCGAGGGCGGGTAAGCGAGCTGGCCCGCTGTTCCATTGTGAGCTACCATGGCAATGTCCTCTATGACAAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000181026-0-0,1-0,2-0,3-0-2/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.428
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0092919=RNase_T=PU(44.2=38.3)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCAGACCGGAAGAGACAC
R:
CGAAAGGGGTGGGCAGTG
Band lengths:
301-582
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains