HsaALTD1039529-2/2 @ hg38
Alternative 5'ss
Gene
ENSG00000183960 | KCNH8
Description
potassium voltage-gated channel subfamily H member 8 [Source:HGNC Symbol;Acc:HGNC:18864]
Coordinates
chr3:19450106-19451404:+
Coord C1 exon
chr3:19450106-19450274
Coord A exon
chr3:19450275-19450305
Coord C2 exon
chr3:19451155-19451404
Length
31 bp
Sequences
Splice sites
5' ss Seq
GAGGTAATG
5' ss Score
8.73
3' ss Seq
TCCTTCATCTTCTCTGACAGCTT
3' ss Score
9.61
Exon sequences
Seq C1 exon
CCTTGATGCACGCCTTGGTGTTTGGAAACGTGACAGCAATCATACAGAGGATGTACTCCAGATGGTCCCTCTATCACACTAGAACTAAGGATCTGAAAGATTTCATCCGTGTCCATCACTTGCCCCAACAACTCAAGCAGAGGATGCTCGAATATTTTCAAACAACCTG
Seq A exon
GTCAGTCAACAATGGAATAGATTCAAATGAG
Seq C2 exon
CTTTTGAAAGACTTTCCAGATGAACTGCGTTCTGACATCACTATGCACTTGAACAAGGAGATCTTACAGTTGTCCCTTTTTGAATGTGCCAGCCGGGGCTGCCTCAGGTCTCTGTCTCTACACATCAAAACCTCTTTCTGTGCTCCGGGGGAGTATCTGCTGCGTCAAGGGGATGCTTTGCAGGCCATCTACTTTGTATGCTCGGGCTCCATGGAAGTTCTTAAAGACAGCATGGTGCTGGCTATTCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000183960-27-35,28-35-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=PD(4.7=14.9)
A:
NA
C2:
PF0002724=cNMP_binding=PU(45.5=47.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATCCGTGTCCATCACTTGC
R:
TGCATAGTGATGTCAGAACGCA
Band lengths:
114-145
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains