HsaALTD1039542-1/6 @ hg38
Alternative 5'ss
Gene
ENSG00000184009 | ACTG1
Description
actin gamma 1 [Source:HGNC Symbol;Acc:HGNC:144]
Coordinates
chr17:81512232-81512748:-
Coord C1 exon
chr17:81512734-81512748
Coord A exon
NA
Coord C2 exon
chr17:81512232-81512360
Length
0 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGC
5' ss Score
8.69
3' ss Seq
GTCCATCCTTTTCCGGGCAGGTC
3' ss Score
9.37
Exon sequences
Seq C1 exon
CGCGTTTCTCTGCCG
Seq A exon
NA
Seq C2 exon
GTCGCAATGGAAGAAGAGATCGCCGCGCTGGTCATTGACAATGGCTCCGGCATGTGCAAAGCTGGTTTTGCTGGGGACGACGCTCCCCGAGCCGTGTTTCCTTCCATCGTCGGGCGCCCCAGACACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000184009-2-11,3-11,4-11,5-11,6-11,7-11-1/6
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.027
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0002214=Actin=PU(10.4=95.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains