HsaALTD1039805-3/3 @ hg38
Alternative 5'ss
Gene
ENSG00000184922 | FMNL1
Description
formin like 1 [Source:HGNC Symbol;Acc:HGNC:1212]
Coordinates
chr17:45232367-45233297:+
Coord C1 exon
chr17:45232367-45232438
Coord A exon
chr17:45232439-45232480
Coord C2 exon
chr17:45233224-45233297
Length
42 bp
Sequences
Splice sites
5' ss Seq
GGGGTACAT
5' ss Score
1.77
3' ss Seq
TCCCTGTTCTCGGTCCCCAGTTT
3' ss Score
9.27
Exon sequences
Seq C1 exon
GAGCGGTTTCAAGTCAAGAATCCCCCCGCAGCCTACATCCAGAAGCTGAAGAGCTATGTGGATACTGGTGGG
Seq A exon
GTCAGCCGAAAGGTAGCAGCTGATTGGATGTCCAACCTGGGG
Seq C2 exon
TTTAAGAGGCGAGTTCAGGAGTCCACGCAGGTGCTACGGGAGCTGGAGACCTCCCTGAGGACCAACCACATTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000184922-19-10,20-10,21-10-3/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.080
Domain overlap (PFAM):
C1:
PF063718=Drf_GBD=FE(25.2=100)
A:
NA
C2:
PF063718=Drf_GBD=FE(16.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGGTTTCAAGTCAAGAATCCC
R:
AATGTGGTTGGTCCTCAGGGA
Band lengths:
142-184
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains