HsaALTD1040171-2/3 @ hg38
Alternative 5'ss
Gene
ENSG00000185761 | ADAMTSL5
Description
ADAMTS like 5 [Source:HGNC Symbol;Acc:HGNC:27912]
Coordinates
chr19:1507242-1507596:-
Coord C1 exon
chr19:1507557-1507596
Coord A exon
chr19:1507545-1507556
Coord C2 exon
chr19:1507242-1507405
Length
12 bp
Sequences
Splice sites
5' ss Seq
GATGTGAGG
5' ss Score
4.17
3' ss Seq
GGCTGACTGTTCCCTTGCAGCAC
3' ss Score
8.89
Exon sequences
Seq C1 exon
AGACACATCCGCGTGGAACACAGGAGCCGCAACCACCTGG
Seq A exon
GTATCCTAGGAT
Seq C2 exon
CACTGATGGGGGGCGATGGGCGCTACGTGCTTAATGGGCACTGGGTGGTCAGCCCACCAGGGACCTACGAGGCGGCCGGCACGCATGTGGTCTACACCCGAGACACAGGGCCCCAGGAGACATTGCAAGCAGCCGGGCCCACCTCCCATGACCTGCTCCTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000185761-14-20,15-20,16-20-2/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.026 A=NA C2=0.450
Domain overlap (PFAM):
C1:
PF059869=ADAM_spacer1=FE(26.4=100)
A:
NA
C2:
PF059869=ADAM_spacer1=PU(73.9=96.2)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACACAGGAGCCGCAACC
R:
CCTCGTAGGTCCCTGGTGG
Band lengths:
97-109
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains