HsaALTD1040433-1/2 @ hg38
Alternative 5'ss
Gene
ENSG00000186526 | CYP4F8
Description
cytochrome P450 family 4 subfamily F member 8 [Source:HGNC Symbol;Acc:HGNC:2648]
Coordinates
chr19:15615180-15615814:+
Coord C1 exon
chr19:15615180-15615280
Coord A exon
NA
Coord C2 exon
chr19:15615616-15615814
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTGCCA
5' ss Score
3.41
3' ss Seq
CCATCCCGTCTGCCCTGCAGGAT
3' ss Score
9.57
Exon sequences
Seq C1 exon
CCCAGCCTCCTGAAGTGTTTCCTAGATCTGGGGCCAGGAGCAAAAACCTCCTGGCAAAGGAGGAGAGGAGGTTGTGCGGGACAACCTTCTCCTGACAGAAG
Seq A exon
NA
Seq C2 exon
GATGTCGCTGCTGAGCCTGTCTTGGCTGGGCCTCAGGCCGGTGGCAGCATCCCCGTGGCTGCTCCTGCTGGTGGTCGGGGCCTCCTGGCTCCTGGCCCGCATCCTGGCCTGGACCTATGCCTTCTATCACAACGGCCGCCGCCTCCGGTGTTTCCCGCAGCCCCGGAAACAGAACTGGTTCTTGGGTCACCTGGGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000186526-0-0,1-0-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0006717=p450=PU(3.0=21.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGAGGAGAGGAGGTTGTGC
R:
TAGAAGGCATAGGTCCAGGCC
Band lengths:
171-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains