HsaALTD1040435-1/3 @ hg38
Alternative 5'ss
Gene
ENSG00000186529 | CYP4F3
Description
cytochrome P450 family 4 subfamily F member 3 [Source:HGNC Symbol;Acc:HGNC:2646]
Coordinates
chr19:15640829-15641613:+
Coord C1 exon
chr19:15640829-15640929
Coord A exon
NA
Coord C2 exon
chr19:15641415-15641613
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTGCTC
5' ss Score
3.68
3' ss Seq
CCACCCCATCTGCCCTGCAGGAT
3' ss Score
9.56
Exon sequences
Seq C1 exon
GCCCAGCCCAGCCCAGCCTAGCCTCCCACAGCCTTCCCTACATCAGGGGCCAGGGGAAAAAACCTCCCAGAAGAAGGGGAGAGGAGGTTGTGTGGGACAAG
Seq A exon
NA
Seq C2 exon
GATGCCACAGCTGAGCCTGTCCTCGCTGGGCCTTTGGCCAATGGCAGCATCCCCGTGGCTGCTCCTGCTGCTGGTTGGGGCCTCCTGGCTCCTGGCCCGCATCCTGGCCTGGACCTATACCTTCTATGACAACTGCTGCCGCCTCCGGTGTTTCCCGCAACCCCCGAAACGGAATTGGTTCTTGGGTCACCTGGGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000186529-0-2,1-2,2-2-1/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0006717=p450=PU(3.0=21.2)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGAAGAAGGGGAGAGGAGG
R:
CAACCAGCAGCAGGAGCAG
Band lengths:
112-128
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains