HsaALTD1040734-2/2 @ hg38
Alternative 5'ss
Gene
ENSG00000187545 | PRAMEF10
Description
PRAME family member 10 [Source:HGNC Symbol;Acc:HGNC:27997]
Coordinates
chr1:12894586-12895872:-
Coord C1 exon
chr1:12895572-12895872
Coord A exon
chr1:12895556-12895571
Coord C2 exon
chr1:12894586-12895164
Length
16 bp
Sequences
Splice sites
5' ss Seq
GAGGTGACT
5' ss Score
5.88
3' ss Seq
TTCCCCTATGTTACTCATAGGAG
3' ss Score
6.8
Exon sequences
Seq C1 exon
AGTTTTCCCTCGGAGATTTGTCAGAATGAGCCTCCAGGCCCCATCCAGACTGCTGGAGCTGGCAGGGCAGAGCCTGCTGAGGAACCAGTTCTTGACCATCTTCACCCTGGATGAGCTGCCCAGGGAGGTCTTCCCTCTGATGTTCATGGAGGCCTTCAGCATGAGACGTTTTGAGGCCCTGAAGCTGATGGTGCAGGCCTGGCCCTTCCTCCGCCTCCCTCTGGGATCCCTGATGAAGACACCTCATCTGGAGACCTTGCAAGCTGTCCTGAGGGGACTTGATACACTGGTGGCCCAGAAG
Seq A exon
GTTCGCCCCAGGTGAG
Seq C2 exon
GAGGTGGAAACTTCAAGTGCTGGATTTGAGGGATGTTGATGAGAATTTCTGGACCATATGGTCTGGAGCCAGGGTCCTCTCCTGCTCCCCAGAGGCCATGAGTAAGAGGCAGACAGTGGAGGACTGTCCAAGGATGGGAGAGCGCCAGCCCTTGAAGGTGTTCATAGACCTCTGCCTAAAGGAAAGTACACTGGATGAATGCCTGAGCTACCTTTTTGGGTGGATCCACTACAGAAGAGGCCTAGTGCACCTGTGTTGTAGTAAGGTGCAGAATTACTCAATGCCCACTTCAAGTTTCAGAAATCTATTGGAAAGGATATACCCAGACAGTATCCAGGAGTTGGAAGTCTGGAAAAAGTGCTCTCTCAATAAAACGGGAAAGTTTGCCCCTTACCTGAGCCAGATGAGCAATCTTCGTGAACTCTTTTTAGCCTTCGGTTATGAGCGTGAGTTGTACGTGAGCGTCCAGTGGCCGTGCATTCCTGACTTGGACTCTCCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187545-1-1,3-1-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.010
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTTGATACACTGGTGGCCC
R:
GACCCTGGCTCCAGACCATAT
Band lengths:
102-118
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains