HsaALTD1040983-5/5 @ hg38
Alternative 5'ss
Gene
ENSG00000188227 | ZNF793
Description
zinc finger protein 793 [Source:HGNC Symbol;Acc:HGNC:33115]
Coordinates
chr19:37507218-37508403:+
Coord C1 exon
chr19:37507218-37507247
Coord A exon
chr19:37507248-37507307
Coord C2 exon
chr19:37508265-37508403
Length
60 bp
Sequences
Splice sites
5' ss Seq
GGGGTCAGT
5' ss Score
3.99
3' ss Seq
TTCCTAATGTTTCCTTTAAGGCT
3' ss Score
8.35
Exon sequences
Seq C1 exon
GGCACGGTCTCTGAAGAAGATGGATTGGGA
Seq A exon
GTGTGTGGGAATCAATAAATGCGAGTTCTGTGAAATGTCTTGATTTTCAGGGTGCATGGG
Seq C2 exon
GCTCTTTCTGGCAAAGGTAATGACATACGCATCTGTGCCAGCATCCCAAGAGTGAGGCTGGTTTCTGGAAATCCATTCTGACTCTGTGACAGCGGGGATGGATGTGACCTTGCCCGTGGTTAGAAAACAAATTTACTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000188227-4-5,5-5,6-5,7-5,8-5-5/5
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACGGTCTCTGAAGAAGATGG
R:
CGGGCAAGGTCACATCCATC
Band lengths:
145-205
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains