HsaALTD1041116-2/2 @ hg38
Alternative 5'ss
Gene
ENSG00000188747 | NOXA1
Description
NADPH oxidase activator 1 [Source:HGNC Symbol;Acc:HGNC:10668]
Coordinates
chr9:137423606-137426330:+
Coord C1 exon
chr9:137423606-137423706
Coord A exon
chr9:137423707-137423834
Coord C2 exon
chr9:137426248-137426330
Length
128 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGA
5' ss Score
6.71
3' ss Seq
GTGGGCATTTTTGTCCCCAGGCA
3' ss Score
8.8
Exon sequences
Seq C1 exon
CCTTGCACCTCTTCTCGGGCGTCCCGGCGCCGCCCGCCAGGCTGTGCTTCAACGCGGGCTGCGTGCACCTGCTGGCCGGGGACCCCGAGGCCGCGCTGCGG
Seq A exon
GTGAGCGGGGCGTGGGGAGGCCGGTGCGGGCGACGCCTCCGCCTCGAGCCCCTGGGGAGGGCCCAGCGCCCCTCCCCGACCGTCACGGGGTCGCCCTGCCGCCCCCGACCCAGCGAACGCCCCGGCAG
Seq C2 exon
GCATTTGACCAAGCCGTGACCAAGGACACCTGCATGGCGGTTGGCTTCTTCCAGCGAGGAGTGGCCAACTTCCAGCTGGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000188747-0-1,1-1-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134141=TPR_11=PU(33.8=39.0)
A:
NA
C2:
PF134141=TPR_11=FE(39.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGCACCTCTTCTCGGGC
R:
CAGCTGGAAGTTGGCCACTC
Band lengths:
178-306
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains