HsaALTD1041229-1/2 @ hg38
Alternative 5'ss
Gene
ENSG00000189164 | ZNF527
Description
zinc finger protein 527 [Source:HGNC Symbol;Acc:HGNC:29385]
Coordinates
chr19:37379120-37380372:+
Coord C1 exon
chr19:37379120-37379236
Coord A exon
NA
Coord C2 exon
chr19:37380277-37380372
Length
0 bp
Sequences
Splice sites
5' ss Seq
TTGGTATGG
5' ss Score
5.53
3' ss Seq
TTTTCTTCCCCTGTGAACAGGAC
3' ss Score
10.84
Exon sequences
Seq C1 exon
GGGTTGGTGACCTTCAGAGATGTGGCGCTAGACTTTTCCCAAGAAGAGTGGGAATGGCTGAAGCCATCTCAGAAGGATTTATACAGAGATGTCATGTTGGAGAACTACAGGAACTTG
Seq A exon
NA
Seq C2 exon
GACTCTCCATTTCTAAGCCCAACATGATCTCCTTACTGGAGCAAGGGAAGGAACCGTGGATGGTGGAGAGAAAGATGTCACAGGGTCACTGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000189164-3-6,4-6-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.026
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PU(92.3=92.3)
A:
NA
C2:
PF0135222=KRAB=PD(2.6=11.1)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGAAGCCATCTCAGAAGGA
R:
CCAGTAAGGAGATCATGTTGGGC
Band lengths:
100-110
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains