HsaALTD1041368-1/2 @ hg38
Alternative 5'ss
Gene
ENSG00000196199 | MPHOSPH8
Description
M-phase phosphoprotein 8 [Source:HGNC Symbol;Acc:HGNC:29810]
Coordinates
chr13:19646754-19648521:+
Coord C1 exon
chr13:19646754-19647291
Coord A exon
NA
Coord C2 exon
chr13:19648422-19648521
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
3' ss Seq
GGATATCATGTCATTTTCAGGAC
3' ss Score
7.45
Exon sequences
Seq C1 exon
CGAAAACAAGAGAAGATCCCAAAGAAAATAGAAAAACAAAAAAAGAAAAATTTGTCGAATCCCAGGTGGAATCTGAATCAAGTGTACTTAATGATTCTCCCTTTCCAGAGGATGACAGTGAAGGGCTACATTCCGACAGCAGAGAAGAGAAACAAAACACTAAAAGTGCAAGAGAGAGAGCAGGGCAGGACATGGGGCTGGAGCATGGCTTTGAGAAGCCCCTAGACAGTGCCATGAGTGCTGAGGAGGATACCGATGTCAGAGGCAGGAGGAAAAAGAAGACCCCGAGAAAGGCTGAGGACACTAGAGAGAACAGGAAGCTAGAGAACAAGAACGCTTTCTTAGAGAAGAAAACTGTGCCTAAAAAGCAGAGGAATCAAGACAGAAGCAAAAGTGCTGCAGAGTTAGAGAAGCTGATGCCTGTATCTGCCCAAACGCCAAAGGGCCGGAGGTTGAGCGGGGAAGAGAGAGGCCTCTGGTCCACGGACTCAGCCGAGGAG
Seq A exon
NA
Seq C2 exon
GACAAAGAAACCAAAAGAAATGAATCCAAAGAAAAATATCAGAAAAGGCATGATTCTGACAAGGAAGAAAAAGGCAGAAAAGAGCCAAAAGGATTAAAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196199-10-13,11-13-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.942 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAGCTAGAGAACAAGAACGCT
R:
TCTTCCTTGTCAGAATCATGCCT
Band lengths:
253-418
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains