HsaALTD1042114-3/4 @ hg38
Alternative 5'ss
Gene
ENSG00000197279 | ZNF165
Description
zinc finger protein 165 [Source:HGNC Symbol;Acc:HGNC:12953]
Coordinates
chr6:28081004-28085891:+
Coord C1 exon
chr6:28081004-28081104
Coord A exon
chr6:28081105-28081458
Coord C2 exon
chr6:28085481-28085891
Length
354 bp
Sequences
Splice sites
5' ss Seq
ACGGTAAAT
5' ss Score
7.76
3' ss Seq
ATAATATATTCTATCCACAGATG
3' ss Score
9.82
Exon sequences
Seq C1 exon
CCCGTGTCCCCCTCCAAACATCCAGTCCCTCTCATATTGCCTTTGAAATTAGCAGCCTCTGGGTGACCAGACCTTGGCCCTCAGAGGAATCCCGGAGAAAG
Seq A exon
GTAGAACCAGCTTCGGCGTTGGGAACGCAGGCGCGCTTACGCATTTAGTGAGGGTTTGGCGGTCTCCATAGTTACCGCCGCCGCGCGTGACGTCATAGTGGAGCGCTGAGGGCTTGGTGGCGTGGGGTGGGGGCTGTCCTACTGATCCTGAATTTGGGGTCACTGGTAAGAGGAGTTGCCCATTCCAGCCAGGTGGAACGGGGAGGGGTGCCACATGTCTCAGATCTGCCATTGTCTGCGAAAAGAAACTGCTGCGAGGACCATCCCCAATCCCCTGCTTCCCTTGGGAAGAGTAACCGCCGTTTTGTAGGACACTTGGGGACAACCCCGCTTGTCCTGAAATTTATTGACACG
Seq C2 exon
ATGGCTACAGAACCAAAGAAAGCTGCAGCCCAGAACTCTCCAGAGGATGAAGGACTTCTGATAGTGAAGATAGAAGAGGAAGAATTTATCCATGGGCAGGACACTTGCTTACAGAGAAGTGAACTCCTTAAGCAGGAGCTCTGCAGGCAGCTTTTTAGGCAGTTCTGCTACCAGGATTCTCCTGGACCTCGCGAGGCACTGAGCCGCCTCCGGGAGCTCTGCTGTCAGTGGCTGAAGCCAGAGATCCATACCAAGGAACAGATTCTGGAACTGCTGGTGCTAGAGCAGTTCCTGACCATCCTGCCAGGAGATTTGCAGGCCTGGGTACATGAACATTACCCAGAGAGTGGAGAGGAGGCAGTGACCATACTAGAAGATTTGGAGAGAGGCACTGATGAAGCAGTACTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197279-1-0,2-0,3-0,4-0-3/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.153
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0202312=SCAN=PU(97.9=68.6)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCAGAGGAATCCCGGAGAA
R:
GTACCCAGGCCTGCAAATCTC
Band lengths:
351-705
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains