HsaALTD1042539-2/3 @ hg38
Alternative 5'ss
Gene
ENSG00000197959 | DNM3
Description
dynamin 3 [Source:HGNC Symbol;Acc:HGNC:29125]
Coordinates
chr1:172037641-172038461:+
Coord C1 exon
chr1:172037641-172037794
Coord A exon
chr1:172037795-172037979
Coord C2 exon
chr1:172038319-172038461
Length
185 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
3' ss Seq
TATCATTTTGTTTTGTTTAGCAA
3' ss Score
7.35
Exon sequences
Seq C1 exon
GTTCTTGGAAAAGTTTTCATTGTACTGAGCTTGAGGTGCCTGCTGATCTCAGTGGAAATGCCAAGTAGATGGTTATGTCAAGCCTTCAATAGCAGAGAGAGCTTTCCCTTACTCAGTCATGGAGTTGCACTGGGATCTAGAGATGGAAGTATGA
Seq A exon
GTAAGTTTCTGCCTCAGCTGAAGAATGTGGAGAAAATTAACAGCTGACAGGTGCCTCTAGCACCTTGGCTACCTGAGCTTCATCAGTGTGGTAAACCACTTAGTCCTGAGAACACCGGGTAGCAGCTGTGACTCCTAGCTTCCTTCATTTCTATCACATTCTAACTTAAGGTTCCTTTCTACAAG
Seq C2 exon
CAACTTACCAACCACATTCGGGATACCCTACCAAACTTCAGGAACAAACTACAGGGACAGTTGCTCTCCATAGAACATGAAGTAGAAGCCTACAAAAATTTCAAACCAGAAGACCCAACAAGGAAGACCAAAGCATTGCTGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197959-17-21,18-21,19-21-2/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.019 A=NA C2=0.243
Domain overlap (PFAM):
C1:
PF0103115=Dynamin_M=PD(6.8=9.6)
A:
NA
C2:
PF0103115=Dynamin_M=FE(15.9=100)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
ENST00000355305fB14094
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGATCTCAGTGGAAATGCCA
R:
GCAGCAATGCTTTGGTCTTCC
Band lengths:
255-440
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains