HsaALTD1042624-2/3 @ hg38
Alternative 5'ss
Gene
ENSG00000198054 | DSCR8
Description
Down syndrome critical region 8 [Source:HGNC Symbol;Acc:HGNC:16707]
Coordinates
chr21:38121501-38122668:+
Coord C1 exon
chr21:38121501-38121601
Coord A exon
chr21:38121602-38121795
Coord C2 exon
chr21:38122312-38122668
Length
194 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGTA
5' ss Score
5.89
3' ss Seq
CTTATTTCCTGTTTCCTTAGCTT
3' ss Score
7.54
Exon sequences
Seq C1 exon
GGCTTCCCACTTGGCAGGGGCCGTCTTGTCCACTCGTTTCTGTAAACATGGGTGGCAAAAAGAGAAGATGGAGCTGCCATTTAGAACATGCCTAATCCCAG
Seq A exon
GTAGTGTTTTTTGTTGTTGTTGTTGCTGCTGTTGTCGCTTTTTGAGTCGGAGTTTCGCTCTTGTTGCCCAGGCTGGAGTGCAATGGCGCCATCTTGGCTCACCACAGCCTCCGCCTCCTAAGTTCAGGCGATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCGTGAGCCACAGCGCCGGCCCCAG
Seq C2 exon
CTTCATCTTGCTGAGCAAAAATGAAGGAGCCTGGACCCAACTTTGTTACTGTGAGAAAGGGTCTTCATTCATTCAAGATGGCATTTGTTAAGCACCTACTGTGAGTAGATGATCTCCTGTCAAAGACAGTTAACAAATCCTCGGAATATTGCTTCATGTACAGTTATTGGAGATGAGTAACTTACATTCTCTTAATTGTAATGGTTCCTTGGAAAGTCATCGTGGAAAATGAAGGCTGGCTCATACATTTTCCCAGACAGGAATTTGGCTGCCAACAGGGAATTCTAAACAACTAAAAACTCCAGATGATGAATGCACAACATAATGATGGTTAAATTAAAAAAAAAAAAGAGCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198054-0-1,1-1,2-1-2/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.037
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTGCCATTTAGAACATGCCT
R:
TCCACGATGACTTTCCAAGGA
Band lengths:
256-450
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains