HsaALTD1042672-1/2 @ hg38
Alternative 5'ss
Gene
ENSG00000198131 | ZNF544
Description
zinc finger protein 544 [Source:HGNC Symbol;Acc:HGNC:16759]
Coordinates
chr19:58230394-58231820:+
Coord C1 exon
chr19:58230394-58230462
Coord A exon
NA
Coord C2 exon
chr19:58231772-58231820
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATG
5' ss Score
9.43
3' ss Seq
GTCACCTCTCTTTTTCGTAGGTC
3' ss Score
9.75
Exon sequences
Seq C1 exon
ATGTCTACGGATGAGGAAACTGAGGCCTGGAGAGGTTAAAGAGACCCGTTCAGAGTCCTACAGTGGCAG
Seq A exon
NA
Seq C2 exon
GTCTCTATTTTCATTAAAGAAGCTTAAATATTTTGTCAAGTTCAAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198131-7-6,8-6-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains