HsaALTD1042851-1/2 @ hg38
Alternative 5'ss
Gene
ENSG00000198551 | ZNF627
Description
zinc finger protein 627 [Source:HGNC Symbol;Acc:HGNC:30570]
Coordinates
chr19:11614527-11614843:+
Coord C1 exon
chr19:11614527-11614649
Coord A exon
NA
Coord C2 exon
chr19:11614827-11614843
Length
0 bp
Sequences
Splice sites
5' ss Seq
TCTGTAGGT
5' ss Score
2.49
3' ss Seq
TTTCTGGGTCTAAATTTTAGGAA
3' ss Score
8.33
Exon sequences
Seq C1 exon
GATTCAGTGGCCTTTGAGGATGTGGCTGTGAACTTCACCCTGGAGGAGTGGGCTTTGCTGGATCCTTCCCAGAAGAATCTCTACAGGGATGTGATGCGGGAAACCTTCAGGAACCTGGCTTCT
Seq A exon
NA
Seq C2 exon
GAAAACAATGGGAAGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198551-25-47,26-47-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.045 A=NA C2=0.296
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains