HsaALTD1043334-1/3 @ hg38
Alternative 5'ss
Gene
ENSG00000203326 | ZNF525
Description
zinc finger protein 525 [Source:HGNC Symbol;Acc:HGNC:29423]
Coordinates
chr19:53365659-53372296:+
Coord C1 exon
chr19:53365659-53365759
Coord A exon
NA
Coord C2 exon
chr19:53372215-53372296
Length
0 bp
Sequences
Splice sites
5' ss Seq
CGCGTGAGT
5' ss Score
8.4
3' ss Seq
AACATATTTTTATCACTCAGGAT
3' ss Score
7.21
Exon sequences
Seq C1 exon
CTCCTCGCAGGCCCCGCCCAGGCCTGGCTTCTGTCCTTCCCCGCTCAGACGCGCGCAAACCCGGAAGCAGATCGCGTGGAGTGAAGGTCCCTCAGCGGCGC
Seq A exon
NA
Seq C2 exon
GATTGACATCTAAAGACTCTTGGTACATGAGGAAGAAACCCGGAAAAGGAAAGCAGAGGAGTCAGGGATGGCTCTTCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000203326-0-2,1-2,2-2-1/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGGAGTGAAGGTCCCTCAG
R:
AAGAGCCATCCCTGACTCCTC
Band lengths:
103-122
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains