HsaALTD1043390-3/3 @ hg38
Alternative 5'ss
Gene
ENSG00000203795 | FAM24A
Description
family with sequence similarity 24 member A [Source:HGNC Symbol;Acc:HGNC:23470]
Coordinates
chr10:122910621-122911759:+
Coord C1 exon
chr10:122910621-122910721
Coord A exon
chr10:122910722-122910819
Coord C2 exon
chr10:122911633-122911759
Length
98 bp
Sequences
Splice sites
5' ss Seq
GTAGTAAGT
5' ss Score
8.01
3' ss Seq
TCCCTGCACTTTCTCCTTAGGCA
3' ss Score
10.79
Exon sequences
Seq C1 exon
TCTGGCTGAGCCTGAGCTTCCAAAAGTGAGCTGAGCTGTTCAACCTTGGATCTTAATTACTCCTAGCAGGGATAATTAGGTCCCTCTTTCTCAGATTACAG
Seq A exon
GTTTGAGAAGTTCCAAATATCCGATGCCCTAGAGGTTTTTTTCCCTTAATTTTATTGTTACAATTGGCCTTCATCTAGCTCTGGATGGTTGAACTGTA
Seq C2 exon
GCATGGCAAAGATGTTTGATCTCAGGACGAAGATCATGATCGGCATCGGAAGCAGCTTACTGGTTGCCGCGATGGTGCTCCTAAGTGTTGTGTTCTGTCTTTACTTCAAAGTAGCTAAGGCACTAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000203795-0-0,1-0,2-0-3/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF151931=FAM24=PU(12.3=21.4)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTCCAAAAGTGAGCTGAGC
R:
AACACTTAGGAGCACCATCGC
Band lengths:
175-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains