HsaALTD1045505-2/2 @ hg38
Alternative 5'ss
Gene
ENSG00000229809 | ZNF688
Description
zinc finger protein 688 [Source:HGNC Symbol;Acc:HGNC:30489]
Coordinates
chr16:30571010-30571300:-
Coord C1 exon
chr16:30571293-30571300
Coord A exon
chr16:30571225-30571292
Coord C2 exon
chr16:30571010-30571123
Length
68 bp
Sequences
Splice sites
5' ss Seq
CAGGTTGAG
5' ss Score
1.68
3' ss Seq
TGATCCCTGTTCTCTCCCAGGAT
3' ss Score
9.33
Exon sequences
Seq C1 exon
GGCTTCAG
Seq A exon
GTACCCCCTCGGGAGTGTTTTCACCCGCATCCATTTCATTCAGGCAGCAGCACTGCAGCCCCTTCCAG
Seq C2 exon
GATTCCCAGGCCCCAAACCAGCCCTCATCTCTTGGATGGAACAGGAGAGTGAGGCTTGGAGCCCCGCCGCCCAGGATCCTGAGAAGGGGGAAAGACTGGGAGGAGCTCGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000229809-4-9,6-9-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.344 A=NA C2=0.897
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains