HsaALTD1047682-2/3 @ hg38
Alternative 5'ss
Gene
ENSG00000253649 | PRSS51
Description
protease, serine 51 [Source:HGNC Symbol;Acc:HGNC:37321]
Coordinates
chr8:10497712-10498808:-
Coord C1 exon
chr8:10498728-10498808
Coord A exon
chr8:10498711-10498727
Coord C2 exon
chr8:10497712-10497971
Length
17 bp
Sequences
Splice sites
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
3' ss Seq
TTTTTATATTCGTTCTTTAGATT
3' ss Score
9.39
Exon sequences
Seq C1 exon
AAAACGTACAATGTGGCCACAGGCCTGCTTTTCCAAACTCGTCATGGTTACCATTTCATGAACGGCTTCAAGTCCAGAATG
Seq A exon
GTGAGTGCCCGTGGCAA
Seq C2 exon
ATTAGACATGGCCGTGGTAAATGTCACTGTGGTCATGGGAACGAGAACATTCAGCAACATCCACTCGGAGAGAAAGCAAGTGCAGAAGGTCATTATTCACAAAGATTACAAACCGCCCCAGCTCGACAGTGACCTCTCTCTGCTTCTACTTGCCACACCAGTGCAATTCAGCAATTTCAAAATGCCTGTCTGCCTGCAGGAGGAGGAGAGGACCTGGGACTGGTGTTGGATGGCACAGTGGGTAACGACCAATGGGTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000253649-8-4,9-4,10-4-2/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.046 A=NA C2=0.061
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(53.7=67.7)
A:
NA
C2:
PF0008921=Trypsin=PD(8.5=33.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACGTACAATGTGGCCACAGG
R:
ACAGTGACATTTACCACGGCC
Band lengths:
109-126
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains