HsaALTD1048550-2/3 @ hg38
Alternative 5'ss
Gene
ENSG00000260001 | TGFBR3L
Description
transforming growth factor beta receptor 3 like [Source:HGNC Symbol;Acc:HGNC:44152]
Coordinates
chr19:7916956-7917599:+
Coord C1 exon
chr19:7916956-7917034
Coord A exon
chr19:7917035-7917050
Coord C2 exon
chr19:7917473-7917599
Length
16 bp
Sequences
Splice sites
5' ss Seq
GGGGTTGGG
5' ss Score
-4.32
3' ss Seq
CCCACCTTCCTCTCCCCCAGTGT
3' ss Score
10.33
Exon sequences
Seq C1 exon
GAGCCTGGAATCCGGGCGCTGGGGCCCTTCGGGGGCTGGGCACGGGCGACTCTGGCAGTGGAAAGAGGATACTCTCGGG
Seq A exon
GTCTGAGGATCTGGGG
Seq C2 exon
TGTCTGCCTCAGGACGAGGCGTGCGCCGACACTGGCAGTGGCAGCGCCGAGGGCCTGGCTGCTGACGGCCCCCACCTGCACACGCTGACGCAGCCTATCGTGGTCACCGTGCCGCGGCCGCCCCCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000260001-2-2,3-2,4-2-2/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGGCAGTGGAAAGAGGATAC
R:
GTCAGCGTGTGCAGGTGG
Band lengths:
118-134
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains