HsaALTD1049717-3/4 @ hg38
Alternative 5'ss
Gene
ENSG00000276045 | ORAI1
Description
ORAI calcium release-activated calcium modulator 1 [Source:HGNC Symbol;Acc:HGNC:25896]
Coordinates
chr12:121626950-121642677:+
Coord C1 exon
chr12:121626950-121627050
Coord A exon
chr12:121627051-121627174
Coord C2 exon
chr12:121641041-121642677
Length
124 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGC
5' ss Score
6.64
3' ss Seq
TCCTGCCTGTCCCCCCGCAGGTG
3' ss Score
13.54
Exon sequences
Seq C1 exon
AGCACTCCATGCAGGCGCTGTCCTGGCGCAAGCTCTACTTGAGCCGCGCCAAGCTTAAAGCCTCCAGCCGGACCTCGGCTCTGCTCTCCGGCTTCGCCATG
Seq A exon
GTGAGCTCCGGCCGCCCTGCCCTGCCCCCTCTACTGTCCCGGCTGCTCCCGCCCGCAGCCCCGACGGGGCTCTCTGGGCGGGCCGGGCGGGCCAGAGTGAGGGGAAGAGCTGGGAGAAACCGTG
Seq C2 exon
GTGGCAATGGTGGAGGTGCAGCTGGACGCTGACCACGACTACCCACCGGGGCTGCTCATCGCCTTCAGTGCCTGCACCACAGTGCTGGTGGCTGTGCACCTGTTTGCGCTCATGATCAGCACCTGCATCCTGCCCAACATCGAGGCGGTGAGCAACGTGCACAATCTCAACTCGGTCAAGGAGTCCCCCCATGAGCGCATGCACCGCCACATCGAGCTGGCCTGGGCCTTCTCCACCGTCATCGGCACGCTGCTCTTCCTAGCTGAGGTGGTGCTGCTCTGCTGGGTCAAGTTCTTGCCCCTCAAGAAGCAGCCAGGCCAGCCAAGGCCCACCAGCAAGCCCCCCGCCAGTGGCGCAGCAGCCAACGTCAGCACCAGCGGCATCACCCCGGGCCAGGCAGCTGCCATCGCCTCGACCACCATCATGGTGCCCTTCGGCCTGATCTTTATCGTCTTCGCCGTCCACTTCTACCGCTCACTGGTTAGCCATAAGACTGACCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000276045-0-1,1-1,2-1,3-1-3/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.271 A=NA C2=0.179
Domain overlap (PFAM):
C1:
PF078567=Orai-1=PU(16.7=89.5)
A:
NA
C2:
PF078567=Orai-1=PD(82.4=83.6)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCCAAGCTTAAAGCCTCCAG
R:
GGGACTCCTTGACCGAGTTGA
Band lengths:
242-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains