HsaALTD1050354-2/2 @ hg38
Alternative 5'ss
Gene
ENSG00000162980 | ARL5A
Description
ADP ribosylation factor like GTPase 5A [Source:HGNC Symbol;Acc:HGNC:696]
Coordinates
chr2:151827480-151828489:-
Coord C1 exon
chr2:151828389-151828489
Coord A exon
chr2:151828131-151828388
Coord C2 exon
chr2:151827480-151827840
Length
258 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGG
5' ss Score
7.13
3' ss Seq
GTAAAGGTTTCTTGCCCTAGGTC
3' ss Score
6.22
Exon sequences
Seq C1 exon
CGCGTGGTCGTCGCCACCGCAGCCGCCCGAGAGGAGCTGGGGGAGGACGGTGGCCCGCGAGGCTCGTCGCAGACAACGCGGCGGCGATGTCCGCGAGCCAG
Seq A exon
GCGAGTGCCGCGGCGGCAGCGGCGGGGCCTTGCGCGCGGCAGGGCGGCCTGGGCTTCGGCCTCCCTCCGGTTCCCTGGAAGCGGGCCCGCGACCAGCGCGGGAGCAGCAGCAGAGGCGGAGGCTCCAGCGCGTCTCTCTCCTCCCCCTCAGCCTGAGCCGGGGGAAGCCAGGCGGCCCGGGTGTCTGGAGGGGGGGGGTCCGCTGCCCGAGAATGGGAATTCTCTTCACTAGAATATGGAGACTGTTCAATCACCAGG
Seq C2 exon
GTCCGACGTCCCTGAGTAGCACGGCCTGGCCTGTCTTTCAGCCCTTTCTTTGCTCACCAGTTGTGTTTGGACACCACATAGAAGTGCTGGGGTCTTCTGGAATGAAGGTTATAGATTGCTGCCCTAACCGCACCACTGAGCGACCGAGGGTTGCAGAATGCGGAAAACGGGAGGAATCGCTCGACTTGTCCATTACACCTCTGGTTTATGAGCCTGCCCTCCACTGCCACCCGTCTTTGTGTGTGTTGGGGGCAGGGGGGGTTCTTCTGCCTCCTGAATAGAGATGGACTTCTCTCCATTTGTTTTACTTATTATATCTGTGTTTAAGGTTAAGCTTAAGGTCATTTTTCTACTCGTGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000162980-0-2,1-2-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0002516=Arf=PU(6.4=68.8)
A:
NA
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAGGAGCTGGGGGAGGA
R:
GTGGAGGGCAGGCTCATAAAC
Band lengths:
297-555
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains