HsaALTD1050424-2/2 @ hg38
Alternative 5'ss
Gene
ENSG00000076108 | BAZ2A
Description
bromodomain adjacent to zinc finger domain 2A [Source:HGNC Symbol;Acc:HGNC:962]
Coordinates
chr12:56636182-56636943:-
Coord C1 exon
chr12:56636843-56636943
Coord A exon
chr12:56636817-56636842
Coord C2 exon
chr12:56636182-56636293
Length
26 bp
Sequences
Splice sites
5' ss Seq
CTGGTAGTT
5' ss Score
2.03
3' ss Seq
GGCTTTTTGATTCTTGCTAGTTC
3' ss Score
6.7
Exon sequences
Seq C1 exon
AGGGGTGGAGTAGGGGCCTCTAAGCTTCCTTCCATCTGCCTGTGACGTCCTTGGCAGCAGCCTCTCCCGCAGTCTCTCCTGTGTCATGATCTGGACAGAAG
Seq A exon
GTGGAGCCCCTGAGCTGCTTGTGCTG
Seq C2 exon
TTCCCAGCTCACAGTTTGGGAGGATCCAACACCAACCTTTACGTGAAGTGGAGGCCCAAGGACAGTGAGGAGCTGGGTGGTCCCAGCCTGGAGCTGTGCCAGCCTGACATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000076108-0-3,1-3-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.125
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCTGCCTGTGACGTCCTTG
R:
GGCCTCCACTTCACGTAAAGG
Band lengths:
125-151
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains