HsaALTD1050717-1/2 @ hg38
Alternative 5'ss
Gene
ENSG00000150048 | CLEC1A
Description
C-type lectin domain family 1 member A [Source:HGNC Symbol;Acc:HGNC:24355]
Coordinates
chr12:10098808-10111385:-
Coord C1 exon
chr12:10111285-10111385
Coord A exon
NA
Coord C2 exon
chr12:10098808-10098930
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGC
5' ss Score
6.46
3' ss Seq
TTTCACTCTCACCGCTGTAGGAA
3' ss Score
9.06
Exon sequences
Seq C1 exon
CAGGCTGGAGTGCAGTGACACAATCTCAGCTCACTGCTGCCTCCGCCTCCCAGGTTCAAGCGATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAG
Seq A exon
NA
Seq C2 exon
GAATCCAGATGCAGGCCAAGTACAGCAGCACGAGGGACATGCTGGATGATGATGGGGACACCACCATGAGCCTGCATTCTCAAGGCTCTGCCACAACTCGGCATCCAGAGCCCCGGCGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000150048-1-18,2-18-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.853
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF066977=DUF1191=PU(30.6=87.2)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGAGTGCAGTGACACAAT
R:
GGCTCTGGATGCCGAGTTG
Band lengths:
210-347
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains