HsaALTD1050760-2/2 @ hg38
Alternative 5'ss
Gene
ENSG00000198756 | COLGALT2
Description
collagen beta(1-O)galactosyltransferase 2 [Source:HGNC Symbol;Acc:HGNC:16790]
Coordinates
chr1:183978410-184037681:-
Coord C1 exon
chr1:184037581-184037681
Coord A exon
chr1:184037095-184037580
Coord C2 exon
chr1:183978410-183978520
Length
486 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
3' ss Seq
TTGTGCTTTCTCTCATGCAGGGC
3' ss Score
11.19
Exon sequences
Seq C1 exon
GAACCTGGACTAGAGGAACTTTCCTCAGGACTCAGGGCACACAGCCCCTCGGCCACTACTGTCTGCGAGCCCGAGGCGCAGGGGAGCGCCAGCGGCTGCAG
Seq A exon
GTACGCTGCGCACCCGCACTGGGGCCTGGGCGGTGCAGCGGCGGCGGGAGGGTCCTGGGAACCGCAGCCGCCGAGGCCAGTGTGTGAGCCGGCCGGCCGCGGCAAGCCGCATCCCCCGGCCGCCCCTCGCAGCCCCTTGCTCCCCGGCAGCCGCCGCCGCCCTCAGGCAGCCCAGCCGGGCGCTCGCGCCAGGACTTCCCCGCCGCCCGCCTCGGCCCGGAACATGGCTGCGCGCCCTGCTGCCACCCTCGCCTGGTCGCTACTGCTCCTCTCCTCAGCCCTGCTCCGCGAAGGCTGCCGAGCGCGCTTCGTCGCCGAGCGGGACTCGGAGGACGACGGAGAGGAGCCGGTGGTTTTCCCGGAGTCGCCCCTGCAGAGCCCCACGGTGCTCGTGGCGGTCCTCGCCCGCAACGCGGCGCACACGCTGCCGCACTTCCTCGGCTGCCTGGAGCGGCTGGACTACCCCAAGAGCAGGATGGCCATCTG
Seq C2 exon
GGCAGCCACTGATCACAATGTGGATAATACAACAGAAATATTCAGGGAGTGGTTGAAAAATGTACAGAGACTCTATCACTATGTGGAGTGGAGGCCTATGGATGAACCAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198756-1-0,2-0-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.114 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF137041=Glyco_tranf_2_4=PU(21.5=29.5)
A:
NA
C2:
PF137041=Glyco_tranf_2_4=FE(30.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACCTGGACTAGAGGAACTTTC
R:
TCATCCATAGGCCTCCACTCC
Band lengths:
206-692
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains