HsaALTD1050801-1/2 @ hg38
Alternative 5'ss
Gene
ENSG00000110925 | CSRNP2
Description
cysteine and serine rich nuclear protein 2 [Source:HGNC Symbol;Acc:HGNC:16006]
Coordinates
chr12:51076411-51083439:-
Coord C1 exon
chr12:51083339-51083439
Coord A exon
NA
Coord C2 exon
chr12:51076411-51076647
Length
0 bp
Sequences
Splice sites
5' ss Seq
CCGGTAATG
5' ss Score
6.21
3' ss Seq
TCCTTTTTTTCCCTGGGCAGAAT
3' ss Score
9.7
Exon sequences
Seq C1 exon
CGGGACTCGCTCGCTCCTCCCTCCTTCCCACCGGGCTAGGGCGGCGGCGGCAGCGGGGGCGGCAGAGACCATCACGGGAGGAGGCAGCTGCGGCGGGGCCG
Seq A exon
NA
Seq C2 exon
AATCCTAATGTACCTGGCTAGCTGGTGGTGAGTAGGGGCTTTGGGGCCAACTTGGTGGGCTCCCCAAGGAAACCCCTTTGAAACCAATGGATGCATTCACGGGCTCGGGTCTCAAGAGGAAGTTTGATGATGTGGATGTGGGCTCATCAGTTTCCAACTCAGATGATGAGATCTCCAGCAGTGATAGTGCTGACAGCTGCGACAGCCTCAATCCTCCTACCACTGCCAGCTTCACAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000110925-0-9,1-9-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.594
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAGACCATCACGGGAGGAG
R:
TAGGAGGATTGAGGCTGTCGC
Band lengths:
258-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains