HsaALTD1051607-1/6 @ hg38
Alternative 5'ss
Gene
ENSG00000134313 | KIDINS220
Description
kinase D interacting substrate 220 [Source:HGNC Symbol;Acc:HGNC:29508]
Coordinates
chr2:8826986-8837580:-
Coord C1 exon
chr2:8837480-8837580
Coord A exon
NA
Coord C2 exon
chr2:8826986-8827129
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTTGGG
5' ss Score
5.26
3' ss Seq
TATTTTGTCTAATTTAACAGGTA
3' ss Score
8.84
Exon sequences
Seq C1 exon
TGTGGTGAGGGCGACGCGCTTGCAGTCGCCGTCTCTTGCTTCCCCGTCCTCTGACATCGCCTGCAGCCGAGCGGGCCCGTTCCGCCGGAGCTGAGGACCAG
Seq A exon
NA
Seq C2 exon
GTATTCAAATAAAGTTAATTGCAGCTTTCTGTGAAAATGTCAGTTTTGATATCACAGAGCGTCATAAATTATGTAGAGGAAGAAAACATTCCTGCTCTGAAAGCTCTTCTTGAAAAATGCAAAGATGTAGATGAGAGAAATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000134313-0-1,1-1,2-1,3-1,4-1,5-1-1/6
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.005
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF127962=Ank_2=PU(29.0=75.0)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCCCCGTCCTCTGACATCG
R:
TGACATTTTCACAGAAAGCTGCA
Band lengths:
105-116
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains