HsaALTD1051816-3/3 @ hg38
Alternative 5'ss
Gene
ENSG00000254402 | LRRC24
Description
leucine rich repeat containing 24 [Source:HGNC Symbol;Acc:HGNC:28947]
Coordinates
chr8:144524816-144527060:-
Coord C1 exon
chr8:144526960-144527060
Coord A exon
chr8:144526552-144526959
Coord C2 exon
chr8:144524816-144525033
Length
408 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAAA
5' ss Score
4.78
3' ss Seq
CCTGCCAACCTGTGTTTCAGGAG
3' ss Score
8.64
Exon sequences
Seq C1 exon
TGCGCGTGCGCGAGCGTCCCCCGCCCCCTCCCAGCCCGGCGACTGCTCGGGCCCGGCCGCCACCTGCACGGCGGGGGAGCCGCTCGCCGCGGGAGCGTCAG
Seq A exon
GTGAGGGGACGCCCGACCCAAGGTCACCAGGCGTGGGGGCGCTGGGGGATCGGGGACCATCCCGGCTCTGACCCTGGTGCGCTCCGAGAAGGGCGTGGGTCCTGGAGGGGGATGGGGAACGCGGAGGCCACGCCCTCCCTGAGCCCGGCCGAAAATCAACCGGCTCTCGTGGGTAGCAGAGGAGGCCGTGGGGGATACAGGCACCAGGTCGCAGCGCTGCAGAGGTGCGCAAGGGCCGCCCAAAGACCAGCTTGGGCCTCGCACTGCGCCCGAGGCAGACACAGGGCGTTCCATCCTCTTCCCTCCCCGCTCCCGCACAGAGGGGCGCCCAGGAGGCAGTGACAGTCGTCGCGGAATCCTGCGTGTGACACCCCGCCCCTGCCCAGCGGATTAGGGAGTTGTCCTCTG
Seq C2 exon
GAGGGCACGCGTCTGCGGCTGAACCGCGGAAGGGCCGGTGAGGAACCGGGCCTCGGGAGATGGCCCTGAGGGCCCCCGCACTGCTGCCGCTGCTGCTGCTACTACTGCCGCTCCGCGCCGCCGGCTGCCCAGCAGCCTGCCGCTGCTACAGCGCCACGGTGGAGTGTGGCGCCCTGCGGTTGCGCGTCGTCCCGCTGGGAATCCCGCCAGGGACGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000254402-0-2,1-2,2-2-3/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains