HsaALTD1051906-1/3 @ hg38
Alternative 5'ss
Gene
ENSG00000166482 | MFAP4
Description
microfibrillar associated protein 4 [Source:HGNC Symbol;Acc:HGNC:7035]
Coordinates
chr17:19386760-19387250:-
Coord C1 exon
chr17:19387150-19387250
Coord A exon
NA
Coord C2 exon
chr17:19386760-19386838
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTACGG
5' ss Score
10.26
3' ss Seq
CCCTGTCTGCCCATCGCCAGGCA
3' ss Score
6.99
Exon sequences
Seq C1 exon
GGGGCTGGGGCGGCTGGCGGGGGCCCAGCGCATAACTCTGGGCGGTTGCAGTCTGGGGCCGCAGACACCCAGCCACTCTGAGCAGAACTGACAGCATGAAG
Seq A exon
NA
Seq C2 exon
GCACTCCTGGCCCTGCCGCTGCTGCTGCTTCTCTCCACGCCCCCGTGTGCCCCCCAGGTCTCCGGGATCCGAGGAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000166482-0-1,1-1,2-1-1/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCCAGCGCATAACTCTG
R:
CGGATCCCGGAGACCTGG
Band lengths:
151-236
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains