HsaALTD1053433-2/2 @ hg38
Alternative 5'ss
Gene
ENSG00000185863 | TMEM210
Description
transmembrane protein 210 [Source:HGNC Symbol;Acc:HGNC:34059]
Coordinates
chr9:137171641-137172040:-
Coord C1 exon
chr9:137171940-137172040
Coord A exon
chr9:137171882-137171939
Coord C2 exon
chr9:137171641-137171776
Length
58 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGA
5' ss Score
6.03
3' ss Seq
ATGTGGCCCTGTCTCTGCAGCTG
3' ss Score
10.36
Exon sequences
Seq C1 exon
GCCAGGGCTGGACATGGCCCCCGGTCCCTGGCCTGTGTCCTGCCTGCGTGGTGGCCCCTTGGGCCTCACATATTTGTCCCTTCTGCTCATCCCTGCTGCAG
Seq A exon
GTGCCTCCTCCTGCCCCCGCACTCCACTCCCAGCCATGGCTCCCCTTCCCCAGGCAAG
Seq C2 exon
CTGGAACCTACTGTGAATGCAGCCTTGGCCTCAGCCGCGAGGCCCTCATCGCCCTCCTTGTGGTGCTGGCGGGCATCAGTGCCAGCTGCTTCTGTGCCCTCGTCATCGTGGCAATTGGTGTCTTGCGGGCCAAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000185863-0-0,1-0-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF151951=TMEM210=PU(37.1=93.5)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGTCCCTTCTGCTCATCCCT
R:
ACCAATTGCCACGATGACGAG
Band lengths:
147-205
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains