HsaALTD1053744-1/4 @ hg38
Alternative 5'ss
Gene
ENSG00000138658 | ZGRF1
Description
zinc finger GRF-type containing 1 [Source:HGNC Symbol;Acc:HGNC:25654]
Coordinates
chr4:112633156-112636951:-
Coord C1 exon
chr4:112636851-112636951
Coord A exon
NA
Coord C2 exon
chr4:112633156-112633242
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
TATGTCATTTTTAATTTTAGGTG
3' ss Score
10.75
Exon sequences
Seq C1 exon
GCGGGCCAAGTTTTGGGTCCTCATCTGGTGAGGTCCCGCGTTAATGACGTCACGTTGTTTCGCGGGAGAAATTCGAAAGTGGATTTTGTGCAATTTGACAG
Seq A exon
NA
Seq C2 exon
GTGGTATAAATAGTTGAATATTTCCTATTTTCTGGACCCAGCTGGTTTATAACTTCAGAAGAAATAATGGAAAGCCAAGAATTTATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000138658-0-0,1-0,2-0,3-0-1/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF103824=DUF2439=PU(11.1=57.1)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTTTGGGTCCTCATCTGGTG
R:
TGGCTTTCCATTATTTCTTCTGAAGT
Band lengths:
170-326
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains