HsaALTD1053766-2/4 @ hg38
Alternative 5'ss
Gene
ENSG00000263072 | ZNF213-AS1
Description
ZNF213 antisense RNA 1 (head to head) [Source:HGNC Symbol;Acc:HGNC:50505]
Coordinates
chr16:3131747-3134734:-
Coord C1 exon
chr16:3134634-3134734
Coord A exon
chr16:3134630-3134633
Coord C2 exon
chr16:3131747-3132103
Length
4 bp
Sequences
Splice sites
5' ss Seq
TAGGTGAGG
5' ss Score
7.65
3' ss Seq
CCTTCCCCTTTCAATTCAAGGTG
3' ss Score
10.1
Exon sequences
Seq C1 exon
GAGAGGGCACATGGCCTAGCCACAAGTGGAGCTTCTGCTCCGCCCGAAGGGATGCGCTGGAGCGGCCTCTTCCTTCTGCCACGGTCTTTCTTTGCCAACTA
Seq A exon
GTAG
Seq C2 exon
GTGGAGACTGGACCTCAGAAGAGGGAGTGGGTGCCCCGAGAACTCACAGCTAGCGGACAGTGGAAAGGGCAGGAGCCGGACCAAGGTGAGGACAGTGGAACTGAAGGCCGCTGGTTACCTCTCCTGCCCTCCGCTGGCCACAGTGGAGAAGACAGCCCCTCCCTCCTGCTCTGACCTGACAGTGTTCATCCATCGCCCTGTATTAGCGAAGAACAACATCAAGCTGGCTAGCAAGGAACTGTATACAGGGTCCAGCTGGGTATCACACTGGATCTCACCCAAAGCTTAGATGTGATCCAGCTCAGTATCACAAAGCAGAACGAAAAGGATGTGTTTGGGCTGAGAGGCCATACATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000263072-0-9,1-9,2-9,3-9-2/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTTCTGCCACGGTCTTTCT
R:
CTTTCCACTGTCCGCTAGCTG
Band lengths:
98-102
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains