HsaALTD1053767-2/2 @ hg38
Alternative 5'ss
Gene
ENSG00000196793 | ZNF239
Description
zinc finger protein 239 [Source:HGNC Symbol;Acc:HGNC:13031]
Coordinates
chr10:43556344-43574640:-
Coord C1 exon
chr10:43574540-43574640
Coord A exon
chr10:43574471-43574539
Coord C2 exon
chr10:43556344-43558171
Length
69 bp
Sequences
Splice sites
5' ss Seq
CGGGTAAGG
5' ss Score
10.17
3' ss Seq
GAATTGTCTTTGTTCCCTAGGAG
3' ss Score
8.94
Exon sequences
Seq C1 exon
TTCGCCCGCGGCTTGCTGGGACTTGTATTTCGGGGCCCTAGGCGCGCGAGCGGTCAGCATCCGGAATCTGGCCCCTGCAGGCGTGGGGTTCCACGTGGGAG
Seq A exon
GTGAGACTGGCCGGGCTTCCCCAGCCGCTGGCAGAGGCGTTCAGGGGTCAGGAAATGGGTGTGCCGCGG
Seq C2 exon
GAGACTTGAATGAAAATTCTGTGGAGAATCTTCAGCAGAAAACACTTCAGGATCTGTTACATGAGCTTTCCTCCTGGCTAGTTTTGGAAGGCATGGCCAGTACAATTACTGGAAGTCAGGATTGTATTGTGAATCATCGAGGGGAAGTGGATGGGGAGCCTGAACTAGATATTTCCCCTTGTCAACAGTGGGGAGAAGCATCTTCTCCTATTTCCAGAAACAGGGACAGTGTGATGACTCTTCAAAGTGGTTGTTTCGAAAACATTGAAAGTGAAACATATTTGCCTTTGAAAGTCTCAAGCCAAATAGACACACAAGACTCTTCAGTGAAGTTCTGTAAGAATGAGCCTCAGGATCATCAGGAAAGCAGACGTCTCTTTGTAATGGAAGAAAGCACTGAGAGAAAAGTGATAAAGGGGGAAAGTTGTTCAGAGAACCTTCAAGTTAAACTGGTGTCTGATGGACAAGAACTGGCCTCGCCATTGTTAAATGGTGAGGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196793-0-9,1-9-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=5.7)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGGACTTGTATTTCGGGGC
R:
ACTAGCCAGGAGGAAAGCTCA
Band lengths:
168-237
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains