HsaALTD1053770-1/5 @ hg38
Alternative 5'ss
Gene
ENSG00000198169 | ZNF251
Description
zinc finger protein 251 [Source:HGNC Symbol;Acc:HGNC:13045]
Coordinates
chr8:144754696-144755505:-
Coord C1 exon
chr8:144755405-144755505
Coord A exon
NA
Coord C2 exon
chr8:144754696-144754803
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGG
5' ss Score
6.92
3' ss Seq
CTGAGTTCTCCCCACTGAAGGTA
3' ss Score
5.58
Exon sequences
Seq C1 exon
CGGCTCTGGACCCGGTTCTGTGGGAGGGTCCGTTCCGGGCTCGGTGCGACTGCGCAGCTCCTCGGCGCTTCCTCGGTGGCTTCCCCGGGTCGAGCAAACAG
Seq A exon
NA
Seq C2 exon
GTAAGTTCGGGGAGACTTCAGGCCAGGGCAGTCTCCTGTCTTCTCTTGGAAACCACAGCAGCCCATGCACACAGAATGGCAGCCACATTCCAGCTTCCAGGGCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198169-0-2,1-2,2-2,3-2,4-2-1/5
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.025
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTGTGGGAGGGTCCGTTC
R:
GCTGCTGTGGTTTCCAAGAGA
Band lengths:
148-189
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains