HsaALTD1054082-2/2 @ hg38
Alternative 5'ss
Gene
ENSG00000158486 | DNAH3
Description
dynein axonemal heavy chain 3 [Source:HGNC Symbol;Acc:HGNC:2949]
Coordinates
chr16:20987942-20997462:-
Coord C1 exon
chr16:20988736-20997462
Coord A exon
chr16:20988428-20988735
Coord C2 exon
chr16:20987942-20988065
Length
308 bp
Sequences
Splice sites
5' ss Seq
AAAGTAATG
5' ss Score
1.16
3' ss Seq
TTGTGTGTTGTATTCCCCAGGAC
3' ss Score
11.11
Exon sequences
Seq C1 exon
TCAGGGATTGTAAATGCACCAATCAGCACCCTGTCAAAACAGACCACTCGGCTCTACCAATCAGCAGGATGTGGGTGGGGCCAGATAAGAGAATAAAAGCAGGCTGCCCGAGCCAGCAGTGGTAACCCGCTCGGGTCTCTTTCCGCACTGTGGAAGCTTTGTTCTTTCGCTCTTTGCAGTAAATCTTACTGGTGCTCACTCTGTGGGTCCACACTGCTTTTATGAGCTGTAACACTCCCCGCGAAAGTCTGCAACTTCACTCTTGAAGCCAGCGAGACCACGAGTCCACCGGGAGGAACGAATAACTCCAGACATGCCGCCTTAAGAGCTGTAACACTCACCGCGAAGGTCTGCAGCTTCACTCCTGAGCCAGCGAGATGACGAACCCACCAGAAGGAAAAAACTCCGAACACATTCGAACATCAGAAGGAACAACCTCCAGACGCGCCACCTTAAGAGCTGTAACACTCACCGCGAGGGGTCGCGGCTTCATTTTTGAA
Seq A exon
GTCAGTGAGACTAAGAACCCACCAATTCCGGACACAAAAGGAGATTTTCACTTTCAACAAAAGTATTCCTGAATTGATAGACTCTTTTACAATGATCATGTATTGCCTTTATCTTTTAAAAACATTCTTGAGGCTGGGCGCGGTGTCTCATGCCTGCAATCACAGCACTCTGGGAGGCCTGTAGTCCCAGCTACTCTGGAGGCTGAGGCTGGAGAATCTCTTGAGCCCGGGAGGCGGAGGTTGCAGTGAACTGAGATGGCACCACTGCACTCCAGCCTGGGCAACAGAGGGGAACTCCATCTCAAAAA
Seq C2 exon
GACGATTCACTCGCCATCTGAATATCATTTCCATCAATGCCTTTGAGGATGACATTTTAACCAAGATTTTCAGTTCGATTGTTGACTGGCACTTCGGGAAAGGGTTTGATGTGATGTTTTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000158486-66-71,69-71-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF127752=AAA_7=FE(15.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTCTTGAAGCCAGCGAGAC
R:
TTTCCCGAAGTGCCAGTCAAC
Band lengths:
344-652
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains