HsaALTD1054177-2/2 @ hg38
Alternative 5'ss
Gene
ENSG00000181638 | ZFP41
Description
ZFP41 zinc finger protein [Source:HGNC Symbol;Acc:HGNC:26786]
Coordinates
chr8:143249141-143251340:+
Coord C1 exon
chr8:143249141-143249499
Coord A exon
chr8:143249500-143249550
Coord C2 exon
chr8:143249690-143251340
Length
51 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGG
5' ss Score
6.92
3' ss Seq
ATGTTCTTGCTTCTCCCCAGCAC
3' ss Score
8.65
Exon sequences
Seq C1 exon
GGTGGCTCCCACCTGTAGTCCCAGCTACTCAGGAAGCTGAGGTGGGAAGGATGTGACATGAGGGGTTCTGCTGGCTGCTGTGGTCCATGGCAGGGGGGCAGCCCTGGTTTCATGAACTCAGAACCCAGCCTCTGGGGGATGGAAGCACTCTCCACTGGGCACGTGTGGTCCCTGCAGCCTGTAGCTTCAAAGCACGGTGACTGGTTCCAAGCCCAGTATGGTGGAGAAGGAGACTACGGCAGGAACCAGGGGGATTCGGGGGTGGAGGAGGGAAGCCGCAGGGCAGTTGGTGGGTACATCAGATCCTGTGGACATGGTGTGCAGACCCGGAACCCCGGCAGAGGAGCAAGGATTCCTTG
Seq A exon
GTGAGCAACTGATCCCTTCATCGAGACAAGGAAAGGCCGGGAGAGAGTCAG
Seq C2 exon
CACCAAGAGGATGGTGGCCCTTGGCCTCCTGGTGCAGAGCATCAGTCCCACGCTGGGAGTGTGGAGAGGTGCGTGGGAAGCAAGCCATTGAGGAAGTGGGGCCAACAGAGAGGTCAGCAGCCCCTTAGCCCTCACGCTTCCAAGGAACAGAATGATGGAGAAGCCTGCAGGCAGAAAAAAGAAGACGCCGACCCCAAGGGAGGAGGCAGACGTGCAGAAGAGTGCGCTCAGAGAGGAGAAGGTGTCCGGGGACAGAAAGCCACCTGAGAGGCCCACTGTGCCCAGGAAGCCCCGCACAGAGCCCTGCCTGAGTCCTGAAGACGAAGAGCACGTCTTTGATGCCTTCGACGCTTCATTTAAAGATGACTTTGAGGGGGTTCCCGTGTTCATTCCTTTTCAGAGGAAGAAACCCTATGAGTGCAGTGAGTGTGGGCGGATCTTTAAGCACAAGACAGACCACATTCGCCATCAGAGGGTCCACACTGGAGAGAAGCCCTTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000181638-5-2,6-2-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=12.0),PF134651=zf-H2C2_2=WD(100=13.0),PF134651=zf-H2C2_2=WD(100=13.0)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAGTTGGTGGGTACATCAG
R:
AGCGTGGGACTGATGCTCT
Band lengths:
132-183
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains