HsaALTD1054214-2/2 @ hg38
Alternative 5'ss
Gene
ENSG00000197472 | ZNF695
Description
zinc finger protein 695 [Source:HGNC Symbol;Acc:HGNC:30954]
Coordinates
chr1:246999348-247000074:-
Coord C1 exon
chr1:246999948-247000074
Coord A exon
chr1:246999912-246999947
Coord C2 exon
chr1:246999348-246999440
Length
36 bp
Sequences
Splice sites
5' ss Seq
ACAGTAAGG
5' ss Score
5.42
3' ss Seq
CCTTTTTTCTAATAAAACAGGTC
3' ss Score
7.75
Exon sequences
Seq C1 exon
GGACTATTGGCATTCAGGGATGTGGCTCTAGAATTCTCTCCAGAGGAGTGGGAATGCCTGGACCCAGCTCAGCGGAGTTTGTATAGGGATGTGATGTTAGAGAACTACAGAAACCTGATCTCCCTTG
Seq A exon
GTGAGGATAGCTTCAATATGCAATTCCTATTTCACA
Seq C2 exon
GTCTTGCTATGTCTAAGCCAGAACTGATCATCTGTCTGGAGGCAAGGAAAGAGCCCTGGAACGTGAACACAGAGAAGACAGCCAGACACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197472-1-1,2-1-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.031
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGCTCAGCGGAGTTTGTAT
R:
GCTCTTTCCTTGCCTCCAGAC
Band lengths:
118-154
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains