HsaALTD1054280-1/2 @ hg38
Alternative 5'ss
Gene
ENSG00000228315 | GUSBP11
Description
glucuronidase, beta pseudogene 11 [Source:HGNC Symbol;Acc:HGNC:42325]
Coordinates
chr22:23715009-23717208:-
Coord C1 exon
chr22:23717108-23717208
Coord A exon
NA
Coord C2 exon
chr22:23715009-23715194
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGTACCG
5' ss Score
8.5
3' ss Seq
CCCAGCCCTTCTCTTCGCAGTCA
3' ss Score
9.24
Exon sequences
Seq C1 exon
CCCCGAGAGAGCCCGTCGTGGCAGCGCAAGCAGCTGGACGGCCTCTGAAGCTTCCGCGCCGACTTCTCCGACAACCGACGCCGGGGCTTCGAGGAGCAGAG
Seq A exon
NA
Seq C2 exon
TCAGGCCCCACCGTGGACATGCCGGTTCCCTCCAGCTTCAACGACATCGGCCAGGGCTGGCGGCTGCGGCATTTTGTCAGCTGGTTGTGGTATGAACGGGAGGTGACCCTGCTGGAGCGATGGATCCAGGACCTGTGCACAAGAGTGGTGCTGAGGATTGGCAGTGCCCACTTCTATGCCATCGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000228315-0-0,1-0-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTTCTCCGACAACCGACG
R:
TGCACAGGTCCTGGATCCATC
Band lengths:
180-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains