HsaEX0000272 @ hg19
Exon Skipping
Gene
ENSG00000154265 | ABCA5
Description
ATP-binding cassette, sub-family A (ABC1), member 5 [Source:HGNC Symbol;Acc:35]
Coordinates
chr17:67306489-67309437:-
Coord C1 exon
chr17:67309233-67309437
Coord A exon
chr17:67307068-67307167
Coord C2 exon
chr17:67306489-67306575
Length
100 bp
Sequences
Splice sites
3' ss Seq
AATTTTTGTATTTTTTGTAGAGA
3' ss Score
6.53
5' ss Seq
TAGGTGTGA
5' ss Score
2.17
Exon sequences
Seq C1 exon
GAAATTCTTTTTCCACTATTTTTTTTATTTTGGTTAATATTAATTAGCATGATGCATCCAAATAAGAAATATGAAGAAGTGCCTAATATAGAACTCAATCCTATGGACAAGTTTACTCTTTCTAATCTAATTCTTGGATATACTCCAGTGACTAATATTACAAGCAGCATCATGCAGAAAGTGTCTACTGATCATCTACCTGATG
Seq A exon
AGACAGGGTTTCGCCATGCTACCTAGGCTGGTCTCAAGCAATCTACTCCTGGACTCAAGCAATCTACCTGCCTCCACCTTCCAAAGTGCTGGCATTATAG
Seq C2 exon
GTGCACTGGCTCATGCCTGTAATCCCAACTAGTCCGGAGGCTCAGGTGGGAGGATCACTTGAGGCCAGGAGTTCAAGACCAGCTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000154265-'4-9,'4-6,5-9
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(23.9=100),PF126063=RELT=PD(85.7=34.8)
A:
NO
C2:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATGATGCATCCAAATAAGAAATAT
R:
GCTGGTCTTGAACTCCTGGC
Band lengths:
242-342
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)