HsaEX0000576 @ hg19
Exon Skipping
Gene
ENSG00000118777 | ABCG2
Description
ATP-binding cassette, sub-family G (WHITE), member 2 [Source:HGNC Symbol;Acc:74]
Coordinates
chr4:89060945-89152474:-
Coord C1 exon
chr4:89152146-89152474
Coord A exon
chr4:89132818-89132955
Coord C2 exon
chr4:89060945-89061166
Length
138 bp
Sequences
Splice sites
3' ss Seq
TATCCCGTTTTTCCCTTTAGTGC
3' ss Score
10.32
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
GAAAAAAGGAACCCAAGGAGATAGGAGAGCTGTTAATTTCACTCGGGACATTTCCTCGAGGCTAGTTTACTCGGAAAGCCTCAATGTTCCCTGGTAGCTGCAGGATCTACTTTGGGGGCTGCCAAGTTTCCTCTCTCATTCTTTCTCCTGCCCCAAGAGCAGGCAGGAAGGAAAGTTCCTGGACTGATACTCGTCTGTTTAGTAGGCGTGGGTCCTGGTTGAAGTCTGTCTAGGAAAACTCCTAAGTGTAGAAATCTTCTTCGTATTACCACTGTCTCTGCACTGAGATTTGGGCTGCTTTGCTTCCAGCGTCACACATCATAACTGAG
Seq A exon
TGCAGTACCGGTTTGACTGTATCTTCAAGTTAAGAGAATTGCTGTATTCCCCAAAATATCTTGGTCATTTGAAAGTAAAGAGTTCTCGGCCGGGCACAGTGGCTCACGCCTGTAATCCCAGCACTTCAGAAGGCAAAG
Seq C2 exon
AAAGATAAAAACTCTCCAGATGTCTTCCAGTAATGTCGAAGTTTTTATCCCAGTGTCACAAGGAAACACCAATGGCTTCCCCGCGACAGCTTCCAATGACCTGAAGGCATTTACTGAAGGAGCTGTGTTAAGTTTTCATAACATCTGCTATCGAGTAAAACTGAAGAGTGGCTTTCTACCTTGTCGAAAACCAGTTGAGAAAGAAATATTATCGAATATCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000118777_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.025
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0000522=ABC_tran=PU(2.6=5.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTTAGTAGGCGTGGGTCCT
R:
TGCCTTCAGGTCATTGGAAGC
Band lengths:
243-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)