HsaEX0000886 @ hg19
Exon Skipping
Gene
ENSG00000197025 | AC006116.3
Description
NA
Coordinates
chr19:56884900-56890897:+
Coord C1 exon
chr19:56884900-56884992
Coord A exon
chr19:56886055-56886126
Coord C2 exon
chr19:56888236-56890897
Length
72 bp
Sequences
Splice sites
3' ss Seq
GAGACACTTTTATCTTGCAGGAT
3' ss Score
8.52
5' ss Seq
AAGGTTAAA
5' ss Score
2.7
Exon sequences
Seq C1 exon
GACTTTCCATTTCTAAATCTGTGATTTCACTGTTGGAGAAAAGGAAACTGCCTTGGATAATGGCAAAAGAAGAGATAAGAGGCCCATTGCCAG
Seq A exon
GATATTTCAAGGTGTCAGAGATGACCATCTCCCAGGAGCCAAAGGCAAAGACTAGAACTCTCTTTGGAAAAG
Seq C2 exon
ATGTGCCAGGTGCAGAGATTAAGGAGTTATCTGCAAAGAGGGCTATTAATGAAGTATTATCGCAGTTTGACACAGTGATAAAATGTACAAGAAACGTATGTAAGGAATGTGGAAATCTATACTGCCACAATATGCAGCTTACTCTCCATAAGAGAAATCATACACAAAAGAAATGCAATCAGTGTTTAGATTGTGGGAAATACTTCACTCGTCAATCAACTCTCATTCAGCATCAAAGAATCCACACGGGAGAGAGACCCTATAAATGTAACGAATGTATTAAAACCTTCAACCAGAGGGCACACCTTACCTAGCATGAGAGAATTCACACTGGTGAGAAACCTTACAAATGTAAGGAATGCAGGAAAACCTTCAGCCAGATGACTCATCTCACACAGCATCAGACTACACATACGAGAGAAAAGTTCCATGAATGCAGTGAATGTGGAAAGGCCTTCAGCCGTGTCTCAGCTCTTATAGATCACCAGCGAATTCATAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197025-'4-14,'4-6,6-14
Average complexity
S
Mappability confidence:
93%=80=89%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.031 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAGAGATAAGAGGCCCATTGC
R:
AGTAAGCTGCATATTGTGGCAGT
Band lengths:
169-241
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)