HsaEX0000928 @ hg19
Exon Skipping
Gene
ENSG00000239467 | AC007405.6
Description
NA
Coordinates
chr2:171627623-171633687:+
Coord C1 exon
chr2:171627623-171627697
Coord A exon
chr2:171627739-171627937
Coord C2 exon
chr2:171633657-171633687
Length
199 bp
Sequences
Splice sites
3' ss Seq
ACCGGTCTCCCTCTCCCTAGCCC
3' ss Score
10.27
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
TCCGCGCGAGCAGCTAGCCGGGCTGGCTCTCGGTGTGTGCCCTTCGGATGGTCTGCTGAAGAGGGCCGCCAGCTG
Seq A exon
CCCGGTGTGCAGTCTGACCCAGCCCCCACAGCAGACCACCCCCAGACCGGGCGCCCGAGTCTGCGGACCGCTCTACCGCACCTGGTTCTGGCTCTGGGCCCCGGGCCCCGTGGCTGCCAGGGGCCGCCGGGAAGGGAGGATGCGCGCCACTGGGGTGCGCCTGGCTTGCGGCACCCTCCTCCCGCAGTGGTCGGAAGAG
Seq C2 exon
GACTTCTGTAGACAAGACAGATACTGTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000239467_MULTIEX1-1/3=C1-3
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGCTCTCGGTGTGTGC
R:
CTTTACAGTATCTGTCTTGTCTACAG
Band lengths:
84-283
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)