HsaEX0001019 @ hg19
Exon Skipping
Gene
ENSG00000236107 | AC010127.3
Description
NA
Coordinates
chr2:167104705-167108422:+
Coord C1 exon
chr2:167104705-167104786
Coord A exon
chr2:167105853-167105894
Coord C2 exon
chr2:167108344-167108422
Length
42 bp
Sequences
Splice sites
3' ss Seq
GGGTATTGTTTTGTTCACAGCTC
3' ss Score
7.1
5' ss Seq
CAGGTATTT
5' ss Score
7.51
Exon sequences
Seq C1 exon
GTAGCAGAGATCTCTGGAGGTGAAACATTGCTCTGAACTGGCATTGATTCTAGCCCAGCTCTTGTAGACCAATTACCAACTT
Seq A exon
CTCCATCTCCCTCCAGTGCCTGGAACTGGACCTGGCACACAG
Seq C2 exon
GCAAAGGGTTATCAACTGTGCTGCACTCTGAGGAGCTTGACCGGTTTAATCTCTAGAAAGGAATTCACCACCCCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000236107_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATTGCTCTGAACTGGCATTGA
R:
GGTGGGGTGGTGAATTCCTTT
Band lengths:
135-177
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)