HsaEX0001020 @ hg19
Exon Skipping
Gene
ENSG00000249194 | AC010127.4
Description
NA
Coordinates
chr2:166929812-166984523:-
Coord C1 exon
chr2:166984281-166984523
Coord A exon
chr2:166934220-166934311
Coord C2 exon
chr2:166929812-166930180
Length
92 bp
Sequences
Splice sites
3' ss Seq
GACATCTTGGTTGCTTCCAGGTT
3' ss Score
8.19
5' ss Seq
AAGGTATGC
5' ss Score
9.55
Exon sequences
Seq C1 exon
AGTGAGGCGAGGATGAAGCCGAGAGGATACTGCAGAGGTCTCTGGTGCATGTGTGTATGTGTGCGTTTGTGTGTGTTTGTGTGTCTGTGTGTTCTGCCCCAGTGAGACTGCAGCCCTTGTAAATACTTTGACACCTTTTGCAAGAAGGAATCTGAACAATTGCAACTGAAGGCACATTGTTATCATCTCGTCTTTGGGTGATGCTGTTCCTCACTGCAGATGGATAATTTTCCTTTTAATCAG
Seq A exon
GTTTGGGCAATTATGAATAAGGCTGCTGTATACATCCGTGTGCAGGATTTTGTGTGGACATAAGTTTTCAACTCCTTTGGTTAAATCCTAAG
Seq C2 exon
GAATTTCATATGCAGAATAAATGGTAATTAAAATGTGCAGGATGACAAGATGGAGCAAACAGTGCTTGTACCACCAGGACCTGACAGCTTCAACTTCTTCACCAGAGAATCTCTTGCGGCTATTGAAAGACGCATTGCAGAAGAAAAGGCAAAGAATCCCAAACCAGACAAAAAAGATGACGACGAAAATGGCCCAAAGCCAAATAGTGACTTGGAAGCTGGAAAGAACCTTCCATTTATTTATGGAGACATTCCTCCAGAGATGGTGTCAGAGCCCCTGGAGGACCTGGACCCCTACTATATCAATAAGAAAGTGAGTGTTTTTTATCAGGCATATTTTGCTGCTAATTGCCTACTGCATTCCTTGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000249194_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGTGATGCTGTTCCTCACTG
R:
ATGCGTCTTTCAATAGCCGCA
Band lengths:
183-275
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)