HsaEX0001180 @ hg19
Exon Skipping
Gene
ENSG00000245648 | AC022075.1
Description
NA
Coordinates
chr12:10516368-10526735:+
Coord C1 exon
chr12:10516368-10516632
Coord A exon
chr12:10525640-10525736
Coord C2 exon
chr12:10526634-10526735
Length
97 bp
Sequences
Splice sites
3' ss Seq
TTTTTGTTTGTTTCCTTTAGTCT
3' ss Score
8.97
5' ss Seq
GATGTACGT
5' ss Score
6.45
Exon sequences
Seq C1 exon
CTCAATCCCTTGGTCTCTCTGATTCCTTATATATCCCGATACATTTCTGGGGGCTCATCAGGATTGGAGATGACAGATTTACTGTCCCCTTTGCCTGCGATACTAGGTCCCCGGGGCCAGGAGAGACCCGGCATCCAAGGTGTGCCACAGCTGAGCTTCACCCGGATATATAGACCAGCTCTCCCCACGTCCCAGCACCCTGCCTGGCAGCGCAATGGAACCGAGGATGGGGCTGCAGGACGATACCAGCACTTCAGGAACTGTG
Seq A exon
TCTCAGTTGGCAGTGTTACCGCTGGTGTAATCTCTTCTCTGTTCCTGGCTTTTATTGAGATGGTTGATCATCTTTACACAGTCCTTTGCATGCAGAT
Seq C2 exon
ACAGAATCTTGCTCCGCTGCCAAGGCTGGAGTGCACTGGTTCAATCTCGGCTCACTGCAAACTCTGCCTCCCAAGTTCAAGTGATTCTCCTGTGTCAGTTTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000245648_MULTIEX1-1/2=C1-2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTGAGCTTCACCCGGATAT
R:
TGCAGTGAGCCGAGATTGAAC
Band lengths:
176-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)