HsaEX0001437 @ hg38
Exon Skipping
Gene
ENSG00000225205 | AC093818.1
Description
NA
Coordinates
chr2:172495375-172556529:-
Coord C1 exon
chr2:172556089-172556529
Coord A exon
chr2:172512334-172512518
Coord C2 exon
chr2:172495375-172495516
Length
185 bp
Sequences
Splice sites
3' ss Seq
ATTTTTATTTTTCAAAATAGGGT
3' ss Score
8.59
5' ss Seq
CAGGTATGC
5' ss Score
9.37
Exon sequences
Seq C1 exon
GCCAGCCAGCGCCGGCACTTCGGAGGGAGGAAGGAAGCACCTAAGGCGCTGGGGGCGGAAACGCTGAGGAGGAGGGGTGCGCCTCAGGCGAGAGCTGGCCGGCGCCGACCCGGCCTGGGGCAGCGGCCGCAGCTCCCCGCCCGGGACCGCGCAAAAAGGCCCAAGGTCCCGGGCCGCACTCACCGAAGTCCAGGAACTGCTTCATGGAGAGCGGGGACGGCGAGAAGCGCGCGTAGAAGTCCACCTGGCCCGGAACGCCGCGCTCGGACGCCGGGCTGGAGCCCGAGTCCGAGCTGAAGCTGCGGCTGAAGCCGGCGGCGCGCAGCCCCGGGCCCGGGCCGGCCAAGGCGGCTCCGCGAAGCAGCCGCGCCAGCCTCATGCCGAGTCCCGCTAGAGAAGCCACAGCCAGTACGCCAGGTTTCCCCGCGCCTCTGCCGAGTG
Seq A exon
GGTTGAAGGCAAATACTTGAAGTTGCAATCGAAGGTCAAGAAAATGGAATCAAGAGGTCACAATCCTTCTCTGATGATGGCTTAGAAAGCTGGAAGACACTCAACATTGAATCCTGGGGCTCTGTGCCATGCTTGCTAGGAGAAACAGCCACCATGAGTCCATCTTTCAGATCTCAAGTGAACAG
Seq C2 exon
TCATTCTCCAGCTGGGATTGAGAACAAGGGGAAGCTGGCCATAGAGCCAGGTGACCAAAGATGGAAGACAAAGGGTGGGCTGTGATTCCCAGAGCTCCAAGCCTTGTTCTGTCTTGTCACACCAACTGTTACTGATGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000225205-'0-8,'0-3,16-8
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAAGCGCGCGTAGAAGTC
R:
CCCCTTGTTCTCAATCCCAGC
Band lengths:
251-436
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development